About

This page is to visualize your local PDB file.

How to use

• Rotation: left button
• Translation: middle button or Ctrl-key + left button
• Zoom: mousewheel or right button(up/down) or Shift-key + left button(up/down)
• Slab: left button + Ctrl-key. horizontal move adjusts near clipping plane, vertical move far clipping plane.

You can also change mouse mode with radio buttons at right-bottom corner.

You can load PDB, SDF/MOL(MDL not SYBYL) or XYZ files
-from local disk (don't worry. your file will not be uploaded), Load from file
-from RCSB PDB server, PDBID: Download
-from PubChem server, Compound ID(CID): Download
-or from the textarea below.

Reload molecule from textarea

Color by spectrum chain secondary strcuture B factor polar/nonpolar
Main chain as thick ribbon thin ribbon(faster) strand cylinder & plate C alpha trace B factor Tube bonds (everything)
Nucleic acid bases as sticks lines polygons
Side chains as lines
Don't smooth beta-sheets in ribbons
Non-bonded atoms (solvent/ions) as spheres stars
Small molecules(HETATMs) as sticks ball and stick ball and stick (multiple bond) spheres icosahedrons lines
Multiple bond option is for SDF/MOL file ONLY.
Unit cell
Biological assembly (the last one defined)
Crystal packing
Show HETATMs in symmetry mates (slower)
Background color: white black grey Projection: orthoscopic perspective

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